Hi Shima, there is also a patch for Gromacs available to study ion conduction through membrane channels that you might find useful. Please take a look at this page:
http://www.mpibpc.mpg.de/grubmueller/compel Best, Carsten On Oct 2, 2012, at 8:16 AM, Shima Arasteh <shima_arasteh2...@yahoo.com> wrote: > > > Dear users, > > I want to study ion conduction through a protein-memrane system. > First of all, I tried to simulate a usual protein-membrane system. I'd like > to know if it is possible to add asymmetrical number of ions to leaflets of > membrane? > Secondly, is it possible to apply an external electrical field to study ion > conduction in a system? > > Thanks in advance. > > > Sincerely, > Shima > -- > gmx-users mailing list gmx-users@gromacs.org > http://lists.gromacs.org/mailman/listinfo/gmx-users > * Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > * Please don't post (un)subscribe requests to the list. Use the > www interface or send it to gmx-users-requ...@gromacs.org. > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists -- Dr. Carsten Kutzner Max Planck Institute for Biophysical Chemistry Theoretical and Computational Biophysics Am Fassberg 11, 37077 Goettingen, Germany Tel. +49-551-2012313, Fax: +49-551-2012302 http://www.mpibpc.mpg.de/grubmueller/kutzner -- gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! * Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
