I don't know! :))
Sincerely, Shima ----- Original Message ----- From: Peter C. Lai <[email protected]> To: Discussion list for GROMACS users <[email protected]> Cc: Sent: Sunday, September 23, 2012 10:52 AM Subject: Re: [gmx-users] InflateGro methodology Why don't you just try it and see what happens? On 2012-09-23 12:19:20AM -0700, Shima Arasteh wrote: > > > Dear users, > > I wanna pack the lipids around my protein. To do so, InflateGro methodology > is applied. Following Justin's tutorial KALP15-DPPC, the first step is > scaling up 4 times: > # perl inflategro.pl system.gro 4 POPC 14 system-inflated.gro 5 area.dat > and then shrinking it for 26 times. > > I'd like to know if it is possible to scale up 6 times or more and then scale > it down for around 30 times? Because when I scale up 4 times, I see 2,3 lipid > chains are still in contact with the protein (I am not sure if this would be > a major problem or not!) . > > > Would you please advise me? > > Thanks in advance. > > Sincerely, > Shima > -- > gmx-users mailing list [email protected] > http://lists.gromacs.org/mailman/listinfo/gmx-users > * Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > * Please don't post (un)subscribe requests to the list. Use the > www interface or send it to [email protected]. > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists -- ================================================================== Peter C. Lai | University of Alabama-Birmingham Programmer/Analyst | KAUL 752A Genetics, Div. of Research | 705 South 20th Street [email protected] | Birmingham AL 35294-4461 (205) 690-0808 | ================================================================== -- gmx-users mailing list [email protected] http://lists.gromacs.org/mailman/listinfo/gmx-users * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! * Please don't post (un)subscribe requests to the list. Use the www interface or send it to [email protected]. * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists -- gmx-users mailing list [email protected] http://lists.gromacs.org/mailman/listinfo/gmx-users * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! * Please don't post (un)subscribe requests to the list. Use the www interface or send it to [email protected]. * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
