Thanks Justin. But in my case I want to plot the distance between one atom in the backbone of the protein and other atom present in the ligand. Then how can I specify these two atoms I need for plotting the distance between them.
On Thu, Sep 20, 2012 at 12:26 AM, Justin Lemkul <jalem...@vt.edu> wrote: > > > On 9/19/12 2:55 PM, tarak karmakar wrote: >> >> Dear All, >> >> I want to calculate the distance between the nitrogen atom present in >> the ligand and the H- attached to the backbone of the protein along a >> long trajectory. So can anyone suggest me how to consider these two >> atoms to calculate and plot the distance along with the time ? >> > > g_dist with appropriate index groups. > > -Justin > > -- > ======================================== > > Justin A. Lemkul, Ph.D. > Research Scientist > Department of Biochemistry > Virginia Tech > Blacksburg, VA > jalemkul[at]vt.edu | (540) 231-9080 > http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin > > ======================================== > -- > gmx-users mailing list gmx-users@gromacs.org > http://lists.gromacs.org/mailman/listinfo/gmx-users > * Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > * Please don't post (un)subscribe requests to the list. Use the www > interface or send it to gmx-users-requ...@gromacs.org. > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists -- Tarak -- gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! * Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
