You always use semi-isotropic for bilayer work. The Z is decoupled from x-y due to symmetry.
I don't think I mention anything differently in the paper. Pcoupltype = semiisotropic On 2012-08-16 04:26:38PM -0700, Shima Arasteh wrote: > > Hi, > > I have a question about the Protein-POPC system: > To insert a protein in lipid bilayer, I am suggested to simulate POPC in > water separately before insertion, it might decrease the time of final > simulation. It's OK! > > In the article suggested me by dear Peter C. Lai, I read that POPC was > simulated in anisotropic pressure coupling at first and then after insertion > of protein, semi-isotropic pressure coupling is applied. > Now, would you please telling me why you used this procedure? > And, > Would my system be correct if I use semi-isotropic pressure coupling instead > of anisotropic pressure coupling for the first step? > > Thanks in advance for your replies. > > > Sincerely, > Shima > -- > gmx-users mailing list gmx-users@gromacs.org > http://lists.gromacs.org/mailman/listinfo/gmx-users > * Only plain text messages are allowed! > * Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > * Please don't post (un)subscribe requests to the list. Use the > www interface or send it to gmx-users-requ...@gromacs.org. > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists -- ================================================================== Peter C. Lai | University of Alabama-Birmingham Programmer/Analyst | KAUL 752A Genetics, Div. of Research | 705 South 20th Street p...@uab.edu | Birmingham AL 35294-4461 (205) 690-0808 | ================================================================== -- gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users * Only plain text messages are allowed! * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! * Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
