hello justin, I got one more error, please help me out again. I got the em.gro instead of confout.gro. I reached an area per lipid of ~52 Å2 for POPE bi layer. Next i tried to add ions to the system after solvating with water. i get the following error.
Program grompp, VERSION 4.5.4 Source code file: /build/buildd/gromacs-4.5.4/src/kernel/grompp.c, line: 523 Fatal error: number of coordinates in coordinate file (PRO_POPE_sol.gro, 34105) does not match topology (topol.top, 19707) Is this difference in the number of atoms due to error in solvating. I haven't got this error before.please suggest me what went wrong. ---Bhavani -- gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users * Only plain text messages are allowed! * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! * Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists