You mean I can not see the NPT equilibration process!
Sincerely, Shima ----- Original Message ----- From: Justin Lemkul <jalem...@vt.edu> To: Shima Arasteh <shima_arasteh2...@yahoo.com>; Discussion list for GROMACS users <gmx-users@gromacs.org> Cc: Sent: Thursday, August 9, 2012 10:45 PM Subject: Re: [gmx-users] Visualizing a process On 8/9/12 2:12 PM, Shima Arasteh wrote: > Hi, > > Is it possible to view the process of a NPT or NVT equilibration? Which > command in gromacs can generate a .xtc output? > Only mdrun writes .xtc files of simulations. As far as I know, one cannot watch the simulation in real time but .xtc files can be visualized in a variety of viewing programs after the simulation is complete. -Justin -- ======================================== Justin A. Lemkul, Ph.D. Research Scientist Department of Biochemistry Virginia Tech Blacksburg, VA jalemkul[at]vt.edu | (540) 231-9080 http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin ======================================== -- gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users * Only plain text messages are allowed! * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! * Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
