Thanks for the reply. In fact, I had followed the fixed format of Gromacs
during the conversion. Below is the sample data, where I have just the
{X,Y,Z}:2171OHX OW 5231 -0.543 -2.5801000.000 2171OHX HW1 5232 -0.510 -2.5471000.110 Z coordinate is 1000.000 and 1000.110 respectively in the above two lines. However, in VMD the Z coordinate is read as 000 and and 000.110 which is then multiplied by a factor of 10 to convert them to A. In VMD, the Z coordinate is read as 000*10 = 0 and 000.110*10 = 1.10. (Here the decimal places do not seem to be aligned, but they are aligned in the gro file that I created). With Regards, Satya. -- View this message in context: http://gromacs.5086.n6.nabble.com/Issue-with-GROMACS-file-format-tp4999612p4999614.html Sent from the GROMACS Users Forum mailing list archive at Nabble.com. -- gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users * Only plain text messages are allowed! * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! * Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
