Thank you so much for that, Justin. Now I could expand the bilayer.
I've another query. My protein has a small N-terminal portion embedded in the membrane, I would like to insert only this part into the membrane during 'packing the lipid around the protein' step in your tutorial. Initially I was trying to do simulation only with this TM region and then attaching the rest of the protein with this TM region and simulate the whole system. But was time-taking. Can you please guide me to pack the lipid bilayer only around a 33-residues long peptide in my protein and rest with water? Thanks, Peterson J -- View this message in context: http://gromacs.5086.n6.nabble.com/Error-in-Membrane-simulations-with-POPC-bilayer-tp4999161p4999605.html Sent from the GROMACS Users Forum mailing list archive at Nabble.com. -- gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users * Only plain text messages are allowed! * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! * Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
