and this did not happen with EM?

Did you add new atoms/FF parameters to the existing C36 set?

On 2012-07-13 02:05:47AM -0700, Shima Arasteh wrote:
> 
> Dear gmx users,
> 
> 
> My system is composed of a protein and water. I am working with CHARMM36 and 
> the current version of Gromacs, 4.5.5.
> For NVT equilibration , I get this error:
> 
> "Software inconsistency error:
>  Some interactions seem to be assigned multiple times"
> 
> 
> Through the mailing list, I just found that some bugs might be the reason of 
> the error, and the Gromacs version should be current. But as I said I use the 
> current version of Gromacs. I really don't have any idea for solving this 
> problem.
> 
> Any suggestions would be appreciated.
> 
> 
> Sincerely,
> Shima
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-- 
==================================================================
Peter C. Lai                    | University of Alabama-Birmingham
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Genetics, Div. of Research      | 705 South 20th Street
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