Hi Justin Thank you for your reply. However, when I am using the grompp command, the topol.tpr file is not being formed due to a fatal error. This fatal error is the cumulative of ' No default Ryckaert-Bell.' types for many atoms in the polymer chain. Also, regarding the comment on the atom types and atom names, I have tried Google searching to find the difference, but in vain. Could you help me out with both the issues.
Thank You Sreeta University Of Toronto -- View this message in context: http://gromacs.5086.n6.nabble.com/top-file-incoherent-with-the-values-in-the-ffbonded-itp-file-tp4998966p4998968.html Sent from the GROMACS Users Forum mailing list archive at Nabble.com. -- gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users * Only plain text messages are allowed! * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! * Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
