On 6/19/12 8:58 AM, ankita oindrila wrote:
I am doing simulation of membrane protein in lipid bilayer for my
college project!.
After making the complex of protein and lipid bilayer, I was going
to the step using genbox to solvate the system.
The error that i am now getting is :
Fatal error:
Not enough memory. Failed to realloc 1008588696 bytes for nlist->jjnr,
nlist->jjnr=0x20026008
(called from file ns.c, line 537)
what should i do??
If you need nearly 1 GB to solvate a system, it must be incredibly large.
Consult the following:
http://www.gromacs.org/Documentation/Errors#Cannot_allocate_memory
-Justin
--
========================================
Justin A. Lemkul, Ph.D.
Research Scientist
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin
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