Dear gmx users,
I want to follow the workflow regarding to
http://www.gromacs.org/Documentation/Terminology/Periodic_Boundary_Conditions
for the second step I enter the command as below:
trjconv -f mdwhole.xtc -s md.tpr -dump 0 -o 1stframe.pdb
But I get the error:
Index[232] 235 is larger than the number of atoms in the
trajectory file (234). There is a mismatch in the contents
of your -f, -s and/or -n files
I don't have any index file, so what this error is talking about? How may I
solve it? Anybody may suggest me any solution please?
I would be so thankful for your suggestions.
Sincerely,
Shima
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