Dear gmx users,
I am doing KALP15 in DPPC following the Justin tutorial
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin/gmx-tutorials/membrane_protein/03_solvate.html
. In the second step, the first command is grompp as follow:grompp -f
minim.mdp -c dppc128.gro -p topol_dppc.top -o em.tpr
I want to know if the topol_dppc.top in this command is the .top file which
produced by pdb2gmx at the beginning of the first step? If not, so what is that?
Regards,
Shima
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