HI Guys,
I'm trying to run a short equilibration of p56 tetramer in water. I issue: /home/flores/local/gromacs/bin/mdrun -v -deffnm em -c /home/flores/projects/antibody-design/13JUN12/352/last.2.em.pdb The problem is that last.2.em.pdb has four chains, but none have chain ID's! The file I start with has chains A,B,C, and D, but gromacs seems to strip these and replace them all with " ". Is there any easy way to prevent the chain ID's from being lost? Or do I need to write a script to put them back in? Sam -- gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
