On 12/06/2012 4:20 PM, James Starlight wrote:
Dear Gromacs Users!
I've forced with the problem during analysing of long trajectories
consisted of > 5000 calculated for average system ( ~ 35000 atoms).
Commonly I use VMD for analysing of such task but in case of long
trajectories loading this software has been crashed with the memory
eror message. Could you advise me the possible way to solve this problem
See
http://www.gromacs.org/Documentation/How-tos/Reducing_Trajectory_Storage_Volume
or another software for visualisation as well as extraction of the
selected steps from trajectory as the pdb files ?
trjconv -h for command line cut'n'paste.
Insisting on doing analysis of data .pdb format costs you time and
space. If you're having problems with either, then you should revisit
whether you need that format.
Mark
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