On 6/11/12 6:05 AM, James Starlight wrote:
Dear all!
Recently I've forced with the opposite problem. I have pre-equilbrated bilayer
of highter dimensions than I need. How I could reduce lipid number of such
bilayer as well as reduce total dimensions of such system ?
E.g I have preequilibrated bilayer consisted of 340 lipids. I want to reduce it
to the 200 lipids by the symmetrical deletion of the unnecessary lipids from
each side. Is there simplest way to do it ?
Try genbox with the -box option (with your bilayer as -cs) to set a smaller box
size that will give a suitable number of lipids.
-Justin
--
========================================
Justin A. Lemkul, Ph.D.
Research Scientist
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin
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