On 9/06/2012 11:08 PM, ramaraju801 wrote:
as i said my system is an protein-DNA complex and the error popped up only
for atoms in DNA residues.

That's about 1% of the detail you'll need to provide in order for it to be worth any more of anybody's time helping you :-) See http://www.gromacs.org/Support for advice on how to effectively ask for help. A complete description of your system contents, and copied and pasted input and output is essential. You already know from past threads that your termini are an issue, so make sure you focus on those details.

Mark
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