On 6/4/12 7:29 AM, ramaraju801 wrote:
hi,
i checked the .rtp file residues such as DCN,DC5,DGN,DG5,DAN,DA5,DTN,DT5
dint have any phosphate gp but when i tested the .rtp file with a random DNA
pdb file it is producing a topology file.
Then you'll have to translate this newfound knowledge into something useful for
your system. How do the .rtp entries compare to the contents of your coordinate
file? Is the absence of phosphate relevant?
-Justin
--
========================================
Justin A. Lemkul, Ph.D.
Research Scientist
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin
========================================
--
gmx-users mailing list gmx-users@gromacs.org
http://lists.gromacs.org/mailman/listinfo/gmx-users
Please search the archive at
http://www.gromacs.org/Support/Mailing_Lists/Search before posting!
Please don't post (un)subscribe requests to the list. Use the
www interface or send it to gmx-users-requ...@gromacs.org.
Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
