Hi Joakim,
I am interested to know what other lipids this force field has been
extended to include. Do you have parameters for unsaturated lipid tails
and other classes of phospholipid (such as PE and PG)?
Cheers
Tom
Joakim Jämbeck wrote:
Hi,
have a look at out recently developed all-atom force field.
It is compatible with AMBER force fields for proteins (ff99SB, ff99SB-ILDN and ff03).
The compatibility was tested via microsecond simulations of a peptide embedded
in a bilayer. The paper describing the peptide simulations along with an
extension of the parameter set has been submitted, but for now have a look at
this published paper:
J. Phys. Chem. B, 2012, 116 (10), 3164-3179, doi: 10.1021/jp212503e
All our parameters are available at on Lipidbook. Let me know if you need
anything else!
Best,
J
--
Dr Thomas Piggot
University of Southampton, UK.
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