Dear all, my coarse grained simulations contain a cubic box with 16 peptides. After 85ns peptides aggregate but because of PBC I have problem in analyzing some data like radius of gyration and clustering. I searched mailing list to solve this problem by trjconv. I examined its different options but without any results. casually genconf came in my mind. I want to use this command for a trajectory with option -trj genconf -f .tpr -trj .xtc/.gro -o .gro -nbox 2 1 1 but when I use it I face with "Segmentation fault". I searched mailing list and found just one question"http://lists.gromacs.org/pipermail/gmx-users/2004-July/011196.html"; whithout answer. Please guide me wheather this command can help me to generate an aggregated system for analyzing? If Yes, How? If No help me please?Thank you in advance Faezeh Kargar -- This message has been scanned for viruses and dangerous content by MailScanner, and is believed to be clean.
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