Justin, OOPS!! Sorry for that.. Now I could realize it. Following up.. I have done further iterations with inflategro and reached 0.62 nm^2 which similar to what you have explained in the tutorial.
Now, I could see the lipid bilayer really shrinked and no SOL molecules are seen in between. Now the issue I would like to have clarification on is that only 163 SOL molecules were added up and down which looks very scarce for the simulation. What is the solution? Bala S -- View this message in context: http://gromacs.5086.n6.nabble.com/GPCR-MD-Tutorial-Using-GROMACS-URL-tp4930034p4933854.html Sent from the GROMACS Users Forum mailing list archive at Nabble.com. -- gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
