On 27/04/2012 3:53 PM, seera suryanarayana wrote:
Respected sir,
While i am running the gromacs software i am
getting the following error.Kindly tell me how to over come the error.
Fatal error:
Atom HA in residue LYS 1 was not found in rtp entry LYSH with 15 atoms
while sorting atoms.
Please check out
http://www.gromacs.org/Support/Mailing_Lists#Mailing_List_Etiquette for
advice on how to construct effective requests for help. With only the
above information, all that can be said is that the tool you were using
expected residue LYS that was first in some sequence, and that was being
mapped to .rtp entry LYSH, to lack atom an atom named HA. Background
information on the required matching can be found in chapter 5 of the
manual. Details of how the mismatch occurred can only be found in the
files you have constructed.
Mark
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