I want to calculate some thermodynamics property of the protein in vacuum - It can be chemical potential, free energy or surface tension. Just thinkin of something very simple. I want to use this property to coarse grain my protein and develope the force field for it. Would you suggest some easy thermodynamic property?
Steven On Tue, Apr 24, 2012 at 11:09 AM, Erik Marklund <er...@xray.bmc.uu.se>wrote: > Hi, > > Could you explain what you aim to do in more detail? > > 24 apr 2012 kl. 11.34 skrev Steven Neumann: > > Dear Gmx users, > > Will standart Widom technique to calculate the chemical potential (e.g. > for water where we introduce extra water molecule and the interaction > energy is compared using integrator: tpi) for the protein in vacuum? So in > this case shall I introcuce extra protein and do it as with water? > > Thank you > > Steven > -- > gmx-users mailing list gmx-users@gromacs.org > http://lists.gromacs.org/mailman/listinfo/gmx-users > Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > Please don't post (un)subscribe requests to the list. Use the > www interface or send it to gmx-users-requ...@gromacs.org. > Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > > > ----------------------------------------------- > Erik Marklund, PhD > Dept. of Cell and Molecular Biology, Uppsala University. > Husargatan 3, Box 596, 75124 Uppsala, Sweden > phone: +46 18 471 6688 fax: +46 18 511 755 > er...@xray.bmc.uu.se > http://www2.icm.uu.se/molbio/elflab/index.html > > > -- > gmx-users mailing list gmx-users@gromacs.org > http://lists.gromacs.org/mailman/listinfo/gmx-users > Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > Please don't post (un)subscribe requests to the list. Use the > www interface or send it to gmx-users-requ...@gromacs.org. > Can't post? Read http://www.gromacs.org/Support/Mailing_Lists >
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