Friends, I have created the top (attached) file for a tripeptide using pdb2gmx tool of gromacs. However in the top file, i dnt see the pdb2gmx writing the ff parameters.
I guess that the ff parameters are read directly from the ff.itp given in the given as #include "amber03.ff/forcefield.itp". Is there any way/tool with which i can write these parameters in a separate file. Thanks, Bala -- C. Balasubramanian
tripep_gro455.top
Description: Binary data
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