Dear Justin I'm using your script for obtaining %exist of hydrogen bonds.
When I use ./hb.pl structure.pdb -map hbmap.xpm -index hbond.ndx, I encountered with No -map specified! I noted to points being at the begining of script: # 1. coordinate file (for atom naming) - MUST be a .pdb file with NO CHAIN IDENTIFIERS # 2. hbmap.xpm # 3. hbond.ndx (modified to contain only the atom numbers in the [hbonds...] section, nothing else) How to fix it? Best regrads -- gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
