I think you have to use some special programm for this purpose. AutoDock, for example, will be the right choice.
2012/4/12 sai nitin <sainit...@gmail.com>: > Hi all, > > I am working on protein - ligand molecular dynamics simulation using > gromacs. I have a protein in which i know binding site which is composed of > 5 residues and i have one ligand i have to place this in binding site. > > Can any body tell me how to do place this ligand to binding site > > Thanks in advance > > > Cheers > -- > > Sainitin D > > > -- > gmx-users mailing list gmx-users@gromacs.org > http://lists.gromacs.org/mailman/listinfo/gmx-users > Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > Please don't post (un)subscribe requests to the list. Use the > www interface or send it to gmx-users-requ...@gromacs.org. > Can't post? Read http://www.gromacs.org/Support/Mailing_Lists -- Андрей Гончар -- gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
