You can use g_saltbr option , http://manual.gromacs.org/online/g_saltbr.html
On Thu, Apr 5, 2012 at 5:23 PM, James Starlight <jmsstarli...@gmail.com>wrote: > Dear Gromacs Users! > > > I'd like to monitor origin and destabilisation of salt-bridges during > simulation time. In particular I want to define some charged residues > within selection groups to monitor both of intra-protein as well as > protein-protein interactions. In past I've used only > g_hbond<http://manual.gromacs.org/online/g_hbond.html>utillity to monitor > Hbonds within selection. Is there any specified program > for such task but with salt-bridges only ? > > > Thanks for help, > > James > > -- > gmx-users mailing list gmx-users@gromacs.org > http://lists.gromacs.org/mailman/listinfo/gmx-users > Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > Please don't post (un)subscribe requests to the list. Use the > www interface or send it to gmx-users-requ...@gromacs.org. > Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > -- Bharat Ph.D. Candidate Room No. : 7202A, 2nd Floor Biomolecular Engineering Laboratory Division of Chemical Engineering and Polymer Science Pusan National University Busan -609735 South Korea Lab phone no. - +82-51-510-3680, +82-51-583-8343 Mobile no. - 010-5818-3680 E-mail : monu46...@yahoo.com
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