Check your topology file. The atom LC3 is not found in Gromacs .atp file. How did you generate your .top file? If you generate it using pdb2gmx it should not give you such error.
Cheers, ========================================================= Emmanuel Birru PhD Candidate Faculty of Pharmacy and Pharmaceutical Sciences Monash University (Parkville Campus) 381 Royal Parade, Parkville Victoria 3052, Australia Tel: Int + 61 3 9903 9187 E-mail: emanuel.bi...@monash.edu www.pharm.monash.edu.au -----Original Message----- From: gmx-users-boun...@gromacs.org [mailto:gmx-users-boun...@gromacs.org] On Behalf Of ros...@kth.se Sent: Thursday, 29 March 2012 4:53 PM To: gmx-users@gromacs.org Subject: [gmx-users] Shima Arasteh wants to share a link | Gromacs Shima Arasteh wants to a share a link on the Gromacs wiki: http://www.gromacs.org/ Shima Arasteh says: Dear Gromacs friends, I am a new user of Gromacs, following the kalp-15 in DPPC tutorial instruction but I face a fatal error when I enter this command: grompp -f minim.mdp -c dppc128.gro -p topol_dppc.top -o em.tpr And the fatal error is this: atomtype LC3 not found Anybody can suggest me a solution to solve my problem? Thanks in advance Shima ------------------- This email was sent at the request of a user - please do not respond to this email. -- gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
-- gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
