On 22/03/2012 2:54 PM, Spring buds wrote:
Hi
A protein sits on the top of another protein (not docking). I then
used pdb2gmx command to generate the topology. Surprisingly, i got
five files, as given below: I think the two proteins are not
connected each other. is it possible to make it one posre and topol file.
Yes, see discussion in pdb2gmx -h. (Checking -h should always been a
first place to look for information)
Mark
Many thanks in advance
posre_Protein_chain_A.itp
posre_Protein_chain_A2.itp
topol.top
topol_Protein_chain_A.itp
topol_Protein_chain_A2.itp
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