Did run sudo make install again, but before I executed configure with prefix=/usr/local/gromacs and I did mkdir gromacs in /usr/local before manually. Content in the gromacs folder: bin include lib share
Gromacs finished again with: GROMACS is installed under /usr/local/gromacs. Make sure to update your PATH and MANPATH to find the programs and unix manual pages, and possibly LD_LIBRARY_PATH or /etc/ld.so.conf if you are using dynamic libraries. Please run "make tests" now to verify your installation. If you want links to the executables in /usr/local/bin, you can issue "make links" now. Shall I execute now 'sudo make links' or 'make links', please? Sorry, I also don't really know how to update my PATH variable. Do I have to execute 'make test' as the Gromacs page says test set is broken? Finally, is there something like 'make clean' to allow for a proper, clean re-installation? I thought I better ask again. Sorry. Gudrun Am 16.03.2012 um 20:05 schrieb David van der Spoel: > On 2012-03-16 21:03, bestenborstel wrote: >> Sorry, David, not sure what you mean. Yes, I am the admin of my pc. I can do >> whatever I can :-) >> What do you ask me please to do? > sudo make install > and check on the screen where the stuff is copied to. > >> >> Am 16.03.2012 um 19:54 schrieb David van der Spoel: >> >>> On 2012-03-16 20:49, bestenborstel wrote: >>>> Thank you for your quick reply. >>>> >>>> 'make links' produces: >>>> >>>> Saturn:gromacs-4.5.5 gudrun$ make links >>>> cd /usr/local/gromacs/bin&& programs=`ls`&& cd /usr/local/bin&& \ >>>> for i in $programs; do \ >>>> (test ! -f $i&& ln -s /usr/local/gromacs/bin/$i . ; exit 0); \ >>>> done >>>> /bin/sh: line 0: cd: /usr/local/gromacs/bin: No such file or directory >>>> make: *** [links] Error 1 >>>> >>>> I have a /usr/local/ but there is no gromacs. Not even after running again >>>> 'sudo make -n install' >>>> Sorry, I am not sure where to post this lengthy output. >>>> >>> -n means "not really" >>> run it without to install. >>> But do you have permission to write in /usr/local? >>> >>>> Thank you for your help. >>>> Kind regards >>>> Gudrun >>>> >>> >>> >>> -- >>> David van der Spoel, Ph.D., Professor of Biology >>> Dept. of Cell& Molec. Biol., Uppsala University. >>> Box 596, 75124 Uppsala, Sweden. Phone: +46184714205. >>> sp...@xray.bmc.uu.se http://folding.bmc.uu.se >>> -- >>> gmx-users mailing list gmx-users@gromacs.org >>> http://lists.gromacs.org/mailman/listinfo/gmx-users >>> Please search the archive at >>> http://www.gromacs.org/Support/Mailing_Lists/Search before posting! >>> Please don't post (un)subscribe requests to the list. Use the www interface >>> or send it to gmx-users-requ...@gromacs.org. >>> Can't post? Read http://www.gromacs.org/Support/Mailing_Lists >> > > > -- > David van der Spoel, Ph.D., Professor of Biology > Dept. of Cell & Molec. Biol., Uppsala University. > Box 596, 75124 Uppsala, Sweden. Phone: +46184714205. > sp...@xray.bmc.uu.se http://folding.bmc.uu.se > -- > gmx-users mailing list gmx-users@gromacs.org > http://lists.gromacs.org/mailman/listinfo/gmx-users > Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > Please don't post (un)subscribe requests to the list. Use the www interface > or send it to gmx-users-requ...@gromacs.org. > Can't post? Read http://www.gromacs.org/Support/Mailing_Lists -- gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
