I don't think fftw3 has that option, since disable-threads pertains to mdrun parallelization (forces MPI-only, basically).
On 2012-03-10 05:50:19PM -0800, Wholly Peach wrote: > Hi Mark, > > If for Gromacs I use disable --disable-threads, for fftw3 show I also use > --disable-threads? > > Wholley > > > ________________________________ > From: Mark Abraham <mark.abra...@anu.edu.au> > To: Discussion list for GROMACS users <gmx-users@gromacs.org> > Sent: Sunday, 11 March 2012 11:43 AM > Subject: Re: [gmx-users] gromacs 4.5.5 cygwin installation error message > > On 11/03/2012 12:20 PM, Peter C. Lai wrote: > > Is fftw3 properly installed in /usr/local/lib? > > And of the right precision, like reading the installation guides will warn > you... > > Mark > > > > > On 2012-03-10 03:51:12PM -0800, Wholly Peach wrote: > >> Dear All, > >> For Gromacs installation, my configure command is: > >> ./configure --enable-shared LDFLAGS='-L/usr/local/lib' --disable-threads. > >> After make, the error message is as following. > >> I am looking forward to getting a reply from you on how to avoid the error > >> message. > >> Wholly > >> ..... > >> .libs/gmx_fft_fftw3.o:gmx_fft_fftw3.c:(.text+0x2bb5): undefined reference > >> to `_fftwf_destroy_plan' > >> .libs/gmx_fft_fftw3.o:gmx_fft_fftw3.c:(.text+0x2bcb): undefined reference > >> to `_fftwf_destroy_plan' > >> .libs/gmx_fft_fftw3.o:gmx_fft_fftw3.c:(.text+0x2be1): undefined reference > >> to `_fftwf_destroy_plan' > >> .libs/gmx_fft_fftw3.o:gmx_fft_fftw3.c:(.text+0x2bf7): more undefined > >> references to `_fftwf_destroy_plan' follow > >> .libs/gmx_fft_fftw3.o:gmx_fft_fftw3.c:(.text+0x2c37): undefined reference > >> to `_fftwf_free' > >> .libs/gmx_fft_fftw3.o:gmx_fft_fftw3.c:(.text+0x2d17): undefined reference > >> to `_fftwf_free' > >> collect2: ld returned 1 exit status > >> Makefile:387: recipe for target `libmd.la' failed > >> make[3]: *** [libmd.la] Error 1 > >> make[3]: Leaving directory > >> `/cygdrive/d/GROMACSNEW/GROMACS455/gromacs-4.5.5/src/mdlib' > >> Makefile:302: recipe for target `all-recursive' failed > >> make[2]: *** [all-recursive] Error 1 > >> make[2]: Leaving directory > >> `/cygdrive/d/GROMACSNEW/GROMACS455/gromacs-4.5.5/src' > >> Makefile:238: recipe for target `all' failed > >> make[1]: *** [all] Error 2 > >> make[1]: Leaving directory > >> `/cygdrive/d/GROMACSNEW/GROMACS455/gromacs-4.5.5/src' > >> Makefile:347: recipe for target `all-recursive' failed > >> make: *** [all-recursive] Error 1 > >> -- gmx-users mailing list gmx-users@gromacs.org > >> http://lists.gromacs.org/mailman/listinfo/gmx-users > >> Please search the archive at > >> http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > >> Please don't post (un)subscribe requests to the list. Use the > >> www interface or send it to gmx-users-requ...@gromacs.org. > >> Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > > > > -- gmx-users mailing list gmx-users@gromacs.org > http://lists.gromacs.org/mailman/listinfo/gmx-users > Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > Please don't post (un)subscribe requests to the list. Use the www interface > or send it to gmx-users-requ...@gromacs.org. > Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > -- > gmx-users mailing list gmx-users@gromacs.org > http://lists.gromacs.org/mailman/listinfo/gmx-users > Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > Please don't post (un)subscribe requests to the list. Use the > www interface or send it to gmx-users-requ...@gromacs.org. > Can't post? Read http://www.gromacs.org/Support/Mailing_Lists -- ================================================================== Peter C. Lai | University of Alabama-Birmingham Programmer/Analyst | KAUL 752A Genetics, Div. of Research | 705 South 20th Street p...@uab.edu | Birmingham AL 35294-4461 (205) 690-0808 | ================================================================== -- gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
