On 23/02/2012 5:46 PM, rama david wrote:
Hi GROMACS users,
I wish to study proteins behaviour,With the help of command
genbox -ci protein.gro -nmol <no of protein >.. -box <box size>
-o <out put file> -p <topology file> I am putting the four peptide
at random positions, but I need to put theem close enough so they
are forming at least one hydrogen bond or at least enough close to
start interact immediately with one another ..
I don´t wish to reduced by box size ...
Use editconf to rotate and translate your copies in their own coordinate
files, and then concatenate them by hand - make sure you know how the
file format works. Or do the foregoing in some molecule editor. Then
solvate that.
Mark
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