Dear all, In order to get the secondary structure of my pdb file I need to run the do_dssp program. When I try to run it however I get the following error
Program do_dssp, VERSION 3.3.1 Source code file: do_dssp.c, line: 448 Fatal error: DSSP executable (/usr/local/bin/dssp) does not exist (use setenv DSSP) So I went to the http://swift.cmbi.ru.nl/gv/dssp/DSSP_5.html website and downloaded the program. when then I try to settle the environment variable set an environment variable DSSP pointing to the dssp executable, e.g.: setenv DSSP /opt/dssp/bin/dssp then I get the following error message: -bash: setenv: command not found Any help? Thanks -- Francesca Vitalini PhD student at Computational Molecular Biology Group, Department of Mathematics and Informatics, FU-Berlin Arnimallee 6 14195 Berlin vital...@zedat.fu-berlin.de francesca.vital...@fu-berlin.de +49 3083875776 +49 3083875412 -- gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
