Алексей Раевский wrote:
Hi
Is it possible to use amber forcefield with lipid parameters like it
was done with gmx in "KALP-15 in DPPC" tutorial?
I have to use amber forcefield as it is neccessary for parametrization
of my ligand and its stecking interactions.
If you can find suitable parameters for you lipids, then the workflow is likely
similar, though you may not have to create any sort of hybrid force field if the
atom types, bonded parameters, etc are taken from an existing Amber force field.
-Justin
--
========================================
Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
MILES-IGERT Trainee
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin
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