dina dusti wrote:
Dear Prof.
Thank you very much from your response.
He answer me that I should use from g_gyration for radius of micelle,
but what should I do for hydrocarbon (dry) core or calculation of inner
core of micelle (i.e. the first of carbon on tail of surfactant with COM
of micelle)?
Use g_gyrate, with a custom index group that contains the atoms of interest. If
you're interested in the radius of the hydrocarbon atoms, make that an index
group and perform the analysis on it.
-Justin
--
========================================
Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
MILES-IGERT Trainee
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin
========================================
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