when i tired running it again, i got an error as Cuda error in file '/home/staff/sec/secdpal/software/openmm_tesla/platforms/cuda/./src/kernels// bbsort.cu' in line 176 : unspecified launch failure. /bin/cat: file_loc: No such file or directory
On Thu, Jan 19, 2012 at 8:45 PM, aiswarya pawar <aiswarya.pa...@gmail.com>wrote: > Has the tesla card got to do anything with the error. Am using Nvidia > Tesla S1070 1U server. > > > On Thu, Jan 19, 2012 at 8:37 PM, Szilárd Páll <szilard.p...@cbr.su.se>wrote: > >> And sorting out where the /bin/cat error comes from because that is >> surely not a Gromacs message! >> >> Cheers, >> -- >> Szilárd >> >> >> >> On Thu, Jan 19, 2012 at 1:12 PM, Mark Abraham <mark.abra...@anu.edu.au> >> wrote: >> > On 19/01/2012 8:45 PM, aiswarya pawar wrote: >> > >> > Mark, >> > >> > THe normal mdrun also hangs thus not generating any output. >> > >> > >> > OK. It's your problem to solve... keep simplifying stuff until you can >> > isolate a small number of possible causes. Top of the list is file >> system >> > availability. >> > >> > Mark >> > >> > >> > >> > On Thu, Jan 19, 2012 at 3:09 AM, Mark Abraham <mark.abra...@anu.edu.au> >> > wrote: >> >> >> >> On 19/01/2012 2:59 AM, aiswarya.pa...@gmail.com wrote: >> >> >> >> Hi, >> >> >> >> Its going into the running mode but gets hang there for long hours >> which >> >> generating any data in the output file. And am not able to figure out >> the >> >> error file_doc. Please anyone knows what's going wrong. >> >> >> >> >> >> No, but you should start trying to simplify what you're doing to see >> where >> >> the problem lies. Does normal mdrun work? >> >> >> >> Mark >> >> >> >> >> >> Thanks >> >> Sent from my BlackBerry® on Reliance Mobile, India's No. 1 Network. Go >> for >> >> it! >> >> >> >> -----Original Message----- >> >> From: Szilárd Páll <szilard.p...@cbr.su.se> >> >> Sender: gmx-users-boun...@gromacs.org >> >> Date: Wed, 18 Jan 2012 14:47:59 >> >> To: Discussion list for GROMACS users<gmx-users@gromacs.org> >> >> Reply-To: Discussion list for GROMACS users <gmx-users@gromacs.org> >> >> Subject: Re: [gmx-users] mdrun-gpu error >> >> >> >> Hi, >> >> >> >> Most of those are just warnings, the only error I see there comes from >> >> the shell, probably an error in your script. >> >> >> >> Cheers, >> >> -- >> >> Szilárd >> >> >> >> >> >> >> >> On Wed, Jan 18, 2012 at 12:27 PM, aiswarya pawar >> >> <aiswarya.pa...@gmail.com> wrote: >> >> >> >> Hi users, >> >> >> >> Am running mdrun on gpu . I receive an error such as= >> >> >> >> WARNING: This run will generate roughly 38570 Mb of data >> >> >> >> >> >> WARNING: OpenMM does not support leap-frog, will use velocity-verlet >> >> integrator. >> >> >> >> >> >> WARNING: OpenMM supports only Andersen thermostat with the >> >> md/md-vv/md-vv-avek integrators. >> >> >> >> >> >> WARNING: OpenMM supports only Monte Carlo barostat for pressure >> coupling. >> >> >> >> >> >> WARNING: OpenMM provides contraints as a combination of SHAKE, SETTLE >> and >> >> CCMA. Accuracy is based on the SHAKE tolerance set by the "shake_tol" >> >> option. >> >> >> >> /bin/cat: file_loc: No such file or directory >> >> >> >> >> >> and the job is running but the nothing written into .xtc, .trr, .edr >> files >> >> . >> >> What could have gone wrong? >> >> >> >> -- >> >> Aiswarya B Pawar >> >> >> >> Bioinformatics Dept, >> >> Indian Institute of Science >> >> Bangalore >> >> >> >> >> >> >> >> -- >> >> gmx-users mailing list gmx-users@gromacs.org >> >> http://lists.gromacs.org/mailman/listinfo/gmx-users >> >> Please search the archive at >> >> http://www.gromacs.org/Support/Mailing_Lists/Search before posting! >> >> Please don't post (un)subscribe requests to the list. Use the >> >> www interface or send it to gmx-users-requ...@gromacs.org. >> >> Can't post? Read http://www.gromacs.org/Support/Mailing_Lists >> >> >> >> -- >> >> gmx-users mailing list gmx-users@gromacs.org >> >> http://lists.gromacs.org/mailman/listinfo/gmx-users >> >> Please search the archive at >> >> http://www.gromacs.org/Support/Mailing_Lists/Search before posting! >> >> Please don't post (un)subscribe requests to the list. Use the >> >> www interface or send it to gmx-users-requ...@gromacs.org. >> >> Can't post? Read http://www.gromacs.org/Support/Mailing_Lists >> >> >> >> >> >> >> >> >> >> >> >> -- >> >> gmx-users mailing list gmx-users@gromacs.org >> >> http://lists.gromacs.org/mailman/listinfo/gmx-users >> >> Please search the archive at >> >> http://www.gromacs.org/Support/Mailing_Lists/Search before posting! >> >> Please don't post (un)subscribe requests to the list. Use the >> >> www interface or send it to gmx-users-requ...@gromacs.org. >> >> Can't post? Read http://www.gromacs.org/Support/Mailing_Lists >> > >> > >> > >> > >> > -- >> > Aiswarya B Pawar >> > >> > Bioinformatics Dept, >> > Indian Institute of Science >> > Bangalore >> > >> > >> > >> > >> > >> > >> > -- >> > gmx-users mailing list gmx-users@gromacs.org >> > http://lists.gromacs.org/mailman/listinfo/gmx-users >> > Please search the archive at >> > http://www.gromacs.org/Support/Mailing_Lists/Search before posting! >> > Please don't post (un)subscribe requests to the list. Use the >> > www interface or send it to gmx-users-requ...@gromacs.org. >> > Can't post? Read http://www.gromacs.org/Support/Mailing_Lists >> -- >> gmx-users mailing list gmx-users@gromacs.org >> http://lists.gromacs.org/mailman/listinfo/gmx-users >> Please search the archive at >> http://www.gromacs.org/Support/Mailing_Lists/Search before posting! >> Please don't post (un)subscribe requests to the list. Use the >> www interface or send it to gmx-users-requ...@gromacs.org. >> Can't post? Read http://www.gromacs.org/Support/Mailing_Lists >> > > > > -- > Aiswarya B Pawar > > Bioinformatics Dept, > Indian Institute of Science > Bangalore > > > -- Aiswarya B Pawar Bioinformatics Dept, Indian Institute of Science Bangalore
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