On Fri, Jan 13, 2012 at 7:04 PM, Jianguo Li <ljg...@yahoo.com.sg> wrote: > There is a solution in this mailing list sometime before: > mv md.log to some other folder and copy it back. > Jianguo
I tried, not work. Thanks, > ________________________________ > From: lina <lina.lastn...@gmail.com> > To: Discussion list for GROMACS users <gmx-users@gromacs.org> > Sent: Friday, 13 January 2012, 18:51 > Subject: Re: [gmx-users] Failed to lock: md.log. No locks available. > > On Fri, Jan 13, 2012 at 4:57 PM, Mark Abraham <mark.abra...@anu.edu.au> > wrote: >> On 13/01/2012 7:08 PM, lina wrote: >>> >>> Hi, >>> >>> Failed to lock: md.log. No locks available. >> >> >> mdrun locks various files at various points. If it can't then GROMACS >> won't >> continue, but the problem lies with the file system, and not with GROMACS. >> Possibly some phantom process still thinks it owns the file. > > It's something relevant to the server. > I am not experienced to figure it out even did some rough try. > will drop an email to administrator. > > Thanks, > >> >> Mark >> >> >>> >>> still the same problem I met before, >>> >>> once I terminated, resume not work, there is a md.log file. >>> >>> $ mount >>> /dev/sda1 on / type ext3 (rw) >>> none on /proc type proc (rw) >>> none on /sys type sysfs (rw) >>> none on /dev/pts type devpts (rw,gid=5,mode=620) >>> usbfs on /proc/bus/usb type usbfs (rw) >>> none on /dev/shm type tmpfs (rw) >>> none on /proc/sys/fs/binfmt_misc type binfmt_misc (rw) >>> sunrpc on /var/lib/nfs/rpc_pipefs type rpc_pipefs (rw) >>> honeydewlocal:/vol/hpc_vol/HomeHPC on /home type nfs >>> (rw,rsize=32k,wsize=32k,intr,hard,tcp,addr=192.168.5.83) >>> >>> The /home is mounting on the last one. >>> >>> CPU: 8 Intel(R) Xeon(R) Dual-Core 3.33 Ghz >>> Memory: 114GB RAM >>> HDD Size: 744GB >>> OS: CentOS 4 (64-bits) >>> >>> Thanks for any suggestions, >>> >>> any additional info you need please let me know, >>> >>> Best regards, >> >> >> -- >> gmx-users mailing list gmx-users@gromacs.org >> http://lists.gromacs.org/mailman/listinfo/gmx-users >> Please search the archive at >> http://www.gromacs.org/Support/Mailing_Lists/Search before posting! >> Please don't post (un)subscribe requests to the list. Use the www >> interface >> or send it to gmx-users-requ...@gromacs.org. >> Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > -- > gmx-users mailing list gmx-users@gromacs.org > http://lists.gromacs.org/mailman/listinfo/gmx-users > Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > Please don't post (un)subscribe requests to the list. Use the > www interface or send it to gmx-users-requ...@gromacs.org. > Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > > > > -- > gmx-users mailing list gmx-users@gromacs.org > http://lists.gromacs.org/mailman/listinfo/gmx-users > Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > Please don't post (un)subscribe requests to the list. Use the > www interface or send it to gmx-users-requ...@gromacs.org. > Can't post? Read http://www.gromacs.org/Support/Mailing_Lists -- gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
