On 9/01/2012 8:26 PM, madhumita das wrote:
Hi GROMACS Users,
I have simulated a protein(pdb id
3D9S) for 5 nanoseconds. This protein contains 978 residues and after
5 nanoseconds I got 2.35 by comparing pdb structure with simulated
one. I want to know is this value is ok or protein is disrupted?
Visualize your trajectory to get a handle on what this number means.
Mark
--
gmx-users mailing list gmx-users@gromacs.org
http://lists.gromacs.org/mailman/listinfo/gmx-users
Please search the archive at
http://www.gromacs.org/Support/Mailing_Lists/Search before posting!
Please don't post (un)subscribe requests to the list. Use the
www interface or send it to gmx-users-requ...@gromacs.org.
Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
