Hi:
I am using the following command to submit gromacs md jobs in cluster:
mpirun -exe /opt/gromacs/4.5.5/bin/mdrun_mpi_bg -args "-nosum -dlb yes
-v -s nvt.tpr" -mode VN -np 128
Then I use command tail -f gromacs.out to check the performance of my
jobs and I get the following information:
vol 0.38! imb F 11% pme/F 0.67 step 11200, will finish Thu Jan 5
15:32:42 2012
vol 0.36! imb F 11% pme/F 0.66 step 11300, will finish Thu Jan 5
15:32:42 2012
vol 0.38 imb F 11% pme/F 0.66 step 11400, will finish Thu Jan 5
15:32:42 2012
vol 0.37! imb F 12% pme/F 0.66 step 11500, will finish Thu Jan 5
15:32:42 2012
However, my current time is:
Thu Jan 5 15:56:17 CET 2012
As we can see, gromacs claimed that my job would be finished before my
current time. Does anybody have any idea to fix this?
THX
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