On 4/01/2012 5:04 AM, Rashek Kazi wrote:
Hi Mark (and all)
Thanks for the response. I ran ./configure --disable-threads this
time. ./configure went fine but again upon doing Make I have received
a new error:
Creating library file: .libs/libmd.dll.a
.libs/fft5d.o:fft5d.c:(.text+0x140f): undefined reference to
`_fftwf_plan_guru_d
ft'
.libs/fft5d.o:fft5d.c:(.text+0x18d1): undefined reference to
`_fftwf_plan_guru_d
ft_r2c'
.libs/fft5d.o:fft5d.c:(.text+0x194b): undefined reference to
`_fftwf_plan_guru_d
ft_c2r'
.libs/fft5d.o:fft5d.c:(.text+0x1aef): undefined reference to
`_fftwf_execute'
.libs/fft5d.o:fft5d.c:(.text+0x2133): undefined reference to
`_fftwf_execute'
.libs/gmx_fft_fftw3.o:gmx_fft_fftw3.c:(.text+0x4a): undefined
reference to `_fft
wf_malloc'
.libs/gmx_fft_fftw3.o:gmx_fft_fftw3.c:(.text+0x67): undefined
reference to `_fft
wf_malloc'
.libs/gmx_fft_fftw3.o:gmx_fft_fftw3.c:(.text+0x84): undefined
reference to `_fft
wf_malloc'
.libs/gmx_fft_fftw3.o:gmx_fft_fftw3.c:(.text+0xf4): undefined
reference to `_fft
wf_plan_many_dft'
.libs/gmx_fft_fftw3.o:gmx_fft_fftw3.c:(.text+0x14e): undefined
reference to `_ff
twf_plan_many_dft'
.libs/gmx_fft_fftw3.o:gmx_fft_fftw3.c:(.text+0x1a5): undefined
reference to `_ff
twf_plan_many_dft'
.libs/gmx_fft_fftw3.o:gmx_fft_fftw3.c:(.text+0x1fc): undefined
reference to `_ff
twf_plan_many_dft'
.libs/gmx_fft_fftw3.o:gmx_fft_fftw3.c:(.text+0x253): undefined
reference to `_ff
twf_plan_many_dft'
.libs/gmx_fft_fftw3.o:gmx_fft_fftw3.c:(.text+0x2aa): more undefined
references t
o `_fftwf_plan_many_dft' follow
.libs/gmx_fft_fftw3.o:gmx_fft_fftw3.c:(.text+0x3b1): undefined
reference to `_ff
twf_free'
.libs/gmx_fft_fftw3.o:gmx_fft_fftw3.c:(.text+0x3bd): undefined
reference to `_ff
twf_free'
.libs/gmx_fft_fftw3.o:gmx_fft_fftw3.c:(.text+0x3e7): undefined
reference to `_ff
twf_free'
.libs/gmx_fft_fftw3.o:gmx_fft_fftw3.c:(.text+0x3ef): undefined
reference to `_ff
twf_free'
.libs/gmx_fft_fftw3.o:gmx_fft_fftw3.c:(.text+0x461): undefined
reference to `_ff
twf_destroy_plan'
.libs/gmx_fft_fftw3.o:gmx_fft_fftw3.c:(.text+0x476): undefined
reference to `_ff
twf_destroy_plan'
this continues for a long time and then I get the error at the bottom:
.libs/gmx_fft_fftw3.o:gmx_fft_fftw3.c:(.text+0x2be1): undefined
reference to `_f
ftwf_destroy_plan'
.libs/gmx_fft_fftw3.o:gmx_fft_fftw3.c:(.text+0x2bf7): more undefined
references
to `_fftwf_destroy_plan' follow
.libs/gmx_fft_fftw3.o:gmx_fft_fftw3.c:(.text+0x2c37): undefined
reference to `_f
ftwf_free'
.libs/gmx_fft_fftw3.o:gmx_fft_fftw3.c:(.text+0x2d17): undefined
reference to `_f
ftwf_free'
collect2: ld returned 1 exit status
Makefile:387: recipe for target `libmd.la <http://libmd.la>' failed
make[3]: *** [libmd.la <http://libmd.la>] Error 1
make[3]: Leaving directory `/home/MPrieto/gromacs-4.5.5/src/mdlib'
Makefile:302: recipe for target `all-recursive' failed
make[2]: *** [all-recursive] Error 1
make[2]: Leaving directory `/home/MPrieto/gromacs-4.5.5/src'
Makefile:238: recipe for target `all' failed
make[1]: *** [all] Error 2
make[1]: Leaving directory `/home/MPrieto/gromacs-4.5.5/src'
Makefile:347: recipe for target `all-recursive' failed
make: *** [all-recursive] Error 1
looks like a different set of errors here. Do you think it might have
to do with using FFTW-3.3?
Yes. Configure thought it found FFTW3, but now you can't link to it. See
the general installation instructions for the right kind of approach.
Mark
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