On 12/25/2011 6:04 PM, banafsheh mehrazma wrote:
Dear Mark;
Thank you for your instant reply. You are right, but in my case, there
is a residue 8-OxoG (oxidized G). As you know, in all of the force
fields in Gromacs package, G,C,A and T are known. In your opinion,
what should I do in case of 8-OxoG, to obtain parameters needed for
this new residue?
You're assuming that you need a new atom type and/or bonded parameters
for your force field. You have to determine whether that is true, yet.
Mark
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