Dear all,
I need to calculate the RMSD of a protein during time. So that I've
calculated the trajectory; for the calculation which tool should I
use? g_rms or g_rmsdist ? Which is the difference between these two
tools? If I'm right the main difference is that with g_rms the
structure at the time t is superimposed to the reference structure
before calculate the RMSD, while with g_rmsdist the RMSD is calculated
without any superimposition, am I correct?
Valerio
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