Hi,
I runed 2 ns membrane simulations. But I cann't restart these simulations
using the checkpoint file, The error message is Warning: task died with
signal 11 (Segmentation fault).
Since the trr file include the force, velocity information of atoms, so I
restarted the simulations from trr file and it works. But when I tried to
visionize the trr file in VMD, I saw weird long lines between atoms across the
cell box. I think that is because atoms are swithing from one periodic box to
another. So the bond information are messed up when shown in VMD. What I am
concerned is , is there a problem to restart simulations from trrr file? And
how to restart from cpt file, solving that Segmentation Fault? Could someone
give me help on this? Thanks
chen
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