Thanks for the suggestion. I will try that. On Tue, Nov 29, 2011 at 19:33, Gianluca Santoni <gianluca.sant...@ibs.fr> wrote: > On 11/29/11 2:10 PM, bipin singh wrote: >> >> Hello, >> >> I want to calculate inter helical distance between two helices using >> g_bundle. As mentioned in the manual that >> "g_bundle reads two index groups and divides both of them in -na >> parts. The centers of mass of these parts define >> the tops and bottoms of the axes". >> Please suggest me out of two possible options given below which one is >> the correct way of defining two index groups for calculating >> inter helical distance : >> >> (1) Atom1(CA) and Atom3(CA) in one index and Atom2 and Atom4 in another >> index >> (2) Atom1(CA) and Atom2(CA) in one index and Atom3 and Atom4 in another >> index >> >> >> For reference I am sending the link of figure with above Atom labels. >> >> http://researchweb.iiit.ac.in/~bipin.singh/helix.html >> >> Please have a look at the figure and provide your suggestions. >> >> >> ----------------------- >> Regards, >> Bipin Singh > > I think g_dist is a easier choice. > > > -- > Gianluca Santoni, > Institut de Biologie Structurale > 41 rue Horowitz > Grenoble > _________________________________________________________ > Please avoid sending me Word or PowerPoint attachments. > See http://www.gnu.org/philosophy/no-word-attachments.html > > > -- > gmx-users mailing list gmx-users@gromacs.org > http://lists.gromacs.org/mailman/listinfo/gmx-users > Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > Please don't post (un)subscribe requests to the list. Use the www interface > or send it to gmx-users-requ...@gromacs.org. > Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
-- ----------------------- Regards, Bipin Singh -- gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
