Hi group.
I am having a sudden brainfart here and
apologize for the silliness of the question. If the first amino acid of
your protein is a Glutamic acid, what would you set the protonation
status using the -ter option of pdb2gmx? The protein is in 0.1 molar
NaCl solution. I know it is basic Biochem, but I am a bit stumped here.
Thanks for the favor of a reply.
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