Doaa Ragab wrote:
I am running membrane simulation in gromacs using the posted tutorial:
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin/gmx-tutorials/membrane_protein/03_solvate.html
at the step of
grompp -f minim.mdp -c dppc128.gro -p topol_dppc.top -o em.tpr
I am usually getting the error that: atomtype OW is not found.
Can you help me in this.
You have removed too many lines in the [nonbond_params] section. Only HW lines
need to be commented out or removed (for convenience, really) but OW lines must
be maintained.
-Justin
--
========================================
Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
MILES-IGERT Trainee
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin
========================================
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