The below steps were followed to perform the simulation:
1st) a topology file was generated
(<http://www.psc.edu/general/software/packages/gromacs/online/top.html>.top)
from the pdb-file (.pdb) by the pdb2gmx program;2nd) the complex was solvated
using the programs editconf and genbox.
Finally the ions were added by the preprocessing grompp (command: grompp -f
minim.mdp -c solv.gro -p topol.top -o ions.tpr)but the below error
message was displaied:
Program grompp, VERSION 4.5.3
Source code file: futil.c, line: 491
File input/output error:
minim.mdp
Thanks in advance for any your help.
Look forward to hearing from you.
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