I m using gromacs 4.5.3 version and trying to simulate a protein in liquid media but I found problem in eqilibration step especially when I give following command:
mdrun -deffnm nvt .After giving this command it is showing error,i.e., There is no domain decomposition for 4 nodes that is compatible with the given box and a minimum cell size of 9.02659 nm Change the number of nodes or mdrun option -rdd or -dds Look in the log file for details on the domain decomposition. What should I do now.Please suggest me.I tried above options also.
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