Hello Ahmet: The warnings originating from the LINCS algorithm are dee to either incorrect topology (TOP file) of certain particle or bad initial configuration (GRO file).
If you don't provide this information about your problematic system, there is no chance to help you. -- Dr. Vitaly V. Chaban, 430 Hutchison Hall, Chem. Dept. Univ. Rochester, Rochester, New York 14627-0216 THE UNITED STATES OF AMERICA 2011/10/29 ahmet yıldırım <ahmedo...@gmail.com>: > Dear Dr. Chaban, > > I am studying on protein modelling using Gromacs software for 1-2 years. I > have lincs warning error. I obtained the error "lincs warning" after "mdrun > -deffnm protein-RUN" (finally step). I could not figure out this problem for > weeks :-((( > > If can you help me I will be very very happy? :-( > > Sincerely yours > > Department of Physics, Siirt University, Siirt, Turkey > > -- > Dr.Ahmet YILDIRIM > -- gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
