This was due to that in .gro file corresponded to the end of productive MD I've found this http://i1209.photobucket.com/albums/cc394/own11/mdL.png It's looks like the protein moved out from box so I've thought that some error occured during stimulation
>> > I don't understand this statement. You should also note that a periodic > box has no "outside." Perhaps it would be useful to post images online. If > you choose to do so, please follow bullet point #4 here: > > http://www.gromacs.org/**Support/Mailing_Lists#Mailing_**List_Etiquette<http://www.gromacs.org/Support/Mailing_Lists#Mailing_List_Etiquette> > > > -Justin > > -- > ==============================**========== > > Justin A. Lemkul > Ph.D. Candidate > ICTAS Doctoral Scholar > MILES-IGERT Trainee > Department of Biochemistry > Virginia Tech > Blacksburg, VA > jalemkul[at]vt.edu | (540) 231-9080 > http://www.bevanlab.biochem.**vt.edu/Pages/Personal/justin<http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin> > > ==============================**========== > -- > gmx-users mailing list gmx-users@gromacs.org > http://lists.gromacs.org/**mailman/listinfo/gmx-users<http://lists.gromacs.org/mailman/listinfo/gmx-users> > Please search the archive at http://www.gromacs.org/** > Support/Mailing_Lists/Search<http://www.gromacs.org/Support/Mailing_Lists/Search>before > posting! > Please don't post (un)subscribe requests to the list. Use the www interface > or send it to gmx-users-requ...@gromacs.org. > Can't post? Read > http://www.gromacs.org/**Support/Mailing_Lists<http://www.gromacs.org/Support/Mailing_Lists> >
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